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BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids

https://doi.org/10.1016/j.crmeth.2023.100409

He, Chenfeng; Kalafut, Noah Cohen; Sandoval, Soraya O.; Risgaard, Ryan; Sirois, Carissa L.; Yang, Chen; Khullar, Saniya; Suzuki, Marin; Huang, Xiang; Chang, Qiang; et al (February 2023, Cell Reports Methods)

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High-throughput and high-dimensional single-cell analysis of antigen-specific CD8+ T cells

https://doi.org/10.1038/s41590-021-01073-2

Ma, Ke-Yue; Schonnesen, Alexandra A.; He, Chenfeng; Xia, Amanda Y.; Sun, Eric; Chen, Eunise; Sebastian, Katherine R.; Guo, Yu-Wan; Balderas, Robert; Kulkarni-Date, Mrinalini; et al (December 2021, Nature Immunology)

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High-throughput determination of the antigen specificities of T cell receptors in single cells

https://doi.org/10.1038/nbt.4282

Zhang, Shu-Qi; Ma, Ke-Yue; Schonnesen, Alexandra A; Zhang, Mingliang; He, Chenfeng; Sun, Eric; Williams, Chad M; Jia, Weiping; Jiang, Ning (December 2018, Nature Biotechnology)
null (Ed.)
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Immune Repertoire Sequencing Using Molecular Identifiers Enables Accurate Clonality Discovery and Clone Size Quantification

https://doi.org/10.3389/fimmu.2018.00033

Ma, Ke-Yue; He, Chenfeng; Wendel, Ben S.; Williams, Chad M.; Xiao, Jun; Yang, Hui; Jiang, Ning (February 2018, Frontiers in Immunology)

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